rs52693823 SNP Detail

Summary

• ID
  rs52693823
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:67974773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTAA AAAGAATAAA ATAAAGACAA
  A
  TAAGAAGACA AAACAAATGA ATAAA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147146205	ENSMUSSNP3748044	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss323351609	CHEV_10_67601691	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52693823					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:67974773 () rs orientation: forward

Symbol	Name	Function Class
Arid5b	AT-rich interaction domain 5B	within coordinates
Rr384864	regulatory region 384864	543 bp downstream
Rr433199	regulatory region 433199	1827 bp distal
Rr433200	regulatory region 433200	502 bp distal
Rr433201	regulatory region 433201	317 bp proximal
Tssr93877	transcription start site region 93877	1916 bp downstream
Tssr93878	transcription start site region 93878	1147 bp downstream
Tssr97999	transcription start site region 97999	1735 bp upstream
Tssr98000	transcription start site region 98000	1569 bp upstream