rs52694520 SNP Detail

Summary

• ID
  rs52694520
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172891040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAA CGAGGTGGAT CGTGAGAGAG
  G
  AAGATACCCA ACAGCAGGTC TGTGT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148328524	ENSMUSSNP3417956	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320621363	CHEV_2_172874748	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52694520					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172891040 () rs orientation: forward

Symbol	Name	Function Class
Gm36337	predicted gene, 36337	435 bp downstream
Gm74627	predicted gene, 74627	within coordinates
Gm74628	predicted gene, 74628	within coordinates
Rr571824	regulatory region 571824	261 bp distal
Rr571825	regulatory region 571825	293 bp proximal
Rr571826	regulatory region 571826	868 bp proximal
Rr571827	regulatory region 571827	1301 bp proximal
Rr571828	regulatory region 571828	1676 bp proximal
Rr571829	regulatory region 571829	1945 bp proximal