rs52702146 SNP Detail

Summary

• ID
  rs52702146
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:87345391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCACACCAAA TCAACACCAT CATTTCTATG TCCTTCCTAG
  GCATGGCTTC AGGGGCACCT GCTGCAGGGA AATGGTTCTT AGCTGTGTCT CTTTTAATCT
  Y
  TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCCCTCTCTC TCTCTCTCTC
  TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCCCTCTCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148311463	ENSMUSSNP753835	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss325050442	CHEV_15_87291620	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52702146					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:87345391 () rs orientation: forward

Symbol	Name	Function Class
D15Mit96	DNA segment, Chr 15, Massachusetts Institute of Technology 96	262 bp proximal
Gm35422	predicted gene, 35422	within coordinates
Rr507592	regulatory region 507592	1948 bp distal