rs52717429 SNP Detail

Summary

• ID
  rs52717429
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:136560615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CTTGCTGGTC AAATGAATCA CAGTGAATAT ACATTGATAG
  GTAGATAGAT GCTAGATAGA TAGATAGATA GATAGATAGA TAGATAGATA GATAGATAGA
  C
  AGATAGACAG ATAGACAGAT AGACAGATGA TAGATAGACA GACAGGATTG GACCCAGAGC
  ATTAAGCATG CTAAGCAAGC ACTCATCCCC TAAACTATAC T                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147649437	ENSMUSSNP3575052	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs52717429					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:136560615 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr565864	regulatory region 565864			1620 bp proximal
Rr565865	regulatory region 565865			1731 bp proximal
Snap25	synaptosomal-associated protein 25			Intron
				Noncoding-Transcript-Variant