rs52718237 SNP Detail

Summary

• ID
  rs52718237
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:20748834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAA GAAGAAGATG AAGAAGAAGA
  W
  GAAGAAGAAG AAGAAGAAGA AGAAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C58/J	DBA/1J	NZB/BlNJ	NZW/LacJ	RIIIS/J	SWR/J
ss914509194	MGP_WTSI_1_20678610	EVA_MGPV3	EVA_MGPV3	f	SNP	T	A	T	T	T	T	T	T	T	T	T	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C58/J	DBA/1J	NZB/BlNJ	NZW/LacJ	RIIIS/J	SWR/J
rs52718237					SNP	T	A	T	T	T	T	T	T	T	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss914509194	MGP_WTSI_1_20678610	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:20748834 () rs orientation: forward

Symbol	Name	Function Class
Lincmd1	long intergenic non-protein coding RNA of muscle differentiation 1	within coordinates
Mir206	microRNA 206	400 bp upstream
Mirc37	microRNA cluster 37, including Mir133b through Mir206	400 bp proximal