rs52719449 SNP Detail

Summary

• ID
  rs52719449
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45203988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGCAACAGA ATTAAGAAAC ATGGAAATAC AGAGATATCT
  TAGTGTATAG TTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
  G
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTT TTCTTTTCTC TTCTTTTCTT CTTCTTCCTT
  TTTGGATATA AAGTTTCACT CTGTAACCGA GGAGTCTGT                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss148077475	ENSMUSSNP5884708	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs52719449					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45203988 () rs orientation: forward

Symbol	Name	Function Class
Cd200	CD200 molecule	within coordinates
Tssr4884	transcription start site region 4884	932 bp upstream
Tssr4885	transcription start site region 4885	887 bp upstream
Tssr4886	transcription start site region 4886	557 bp upstream
Tssr141220	transcription start site region 141220	1016 bp upstream
Tssr141221	transcription start site region 141221	992 bp upstream
Tssr141222	transcription start site region 141222	872 bp upstream
Tssr141223	transcription start site region 141223	858 bp upstream
Tssr141224	transcription start site region 141224	835 bp upstream
Tssr141225	transcription start site region 141225	779 bp upstream
Tssr141226	transcription start site region 141226	743 bp upstream
Tssr141227	transcription start site region 141227	708 bp upstream
Tssr141228	transcription start site region 141228	667 bp upstream
Tssr141229	transcription start site region 141229	651 bp upstream
Tssr141230	transcription start site region 141230	499 bp upstream
Tssr141231	transcription start site region 141231	398 bp upstream
Tssr141232	transcription start site region 141232	356 bp upstream