rs52720401 SNP Detail

Summary

• ID
  rs52720401
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45217749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCACTTCCA CTACAGAAAC AACAACAACA ACAAATTCTA
  TTTTAGAACC TTATTACACA CACACACACA CACACACACA CACACACACA CACCTAGTAA
  Y
  GAATAAATGC ATGCTGAAAC TCAAATATAG AAAAGAATAA AAGAGGCAAA GAAAAAGACA
  AAATGTATGT TCATGCATAT GTGCTAGCAG AGAAATGTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325166256	CHEV_16_45397499	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52720401					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45217749 () rs orientation: forward

Symbol	Name	Function Class
Cd200	CD200 molecule	within coordinates
D16Mit84	DNA segment, Chr 16, Massachusetts Institute of Technology 84	312 bp proximal
Rr327058	regulatory region 327058	253 bp proximal
Rr327059	regulatory region 327059	1653 bp proximal
Tssr141233	transcription start site region 141233	241 bp upstream