rs52720683 SNP Detail

Summary

• ID
  rs52720683
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45230895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ctggggaaa gaaagaagga aagagagaga
  aagacagaaa gaaaaagaga aagaaagaaa gaaagaaaga gagagaggga gagagagaaa
  gagggagaga gagaaagaaa gaaagaaaaa gaaagaaaga aagaaagaaa gagagagaga
  R
  aaagggggag agagaAGAAG AAGAAGAAAA aatggaagga agaaaagaat gattcttaat
  gacattctgc tatactaata gattggggcc ttgaccagct gtcatcagag aggcagcaac
  agataaaatc tggttcagag acccacagac                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325166366	CHEV_16_45410645	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52720683					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45230895 () rs orientation: forward

Symbol	Name	Function Class
2300009N04Rik	RIKEN cDNA 2300009N04 gene	1523 bp upstream
Cd200	CD200 molecule	1479 bp upstream
Cd200l1	CD200 molecule like 1	1236 bp downstream
Cpgi8295	CpG island 8295	1569 bp distal
Gm5406	predicted gene 5406	1048 bp upstream
Rr318481	regulatory region 318481	1906 bp proximal
Rr325366	regulatory region 325366	894 bp distal
Tssr138625	transcription start site region 138625	988 bp upstream
Tssr141234	transcription start site region 141234	1582 bp upstream
Tssr141235	transcription start site region 141235	1484 bp upstream