rs52721490 SNP Detail

Summary

• ID
  rs52721490
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:139898754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GCCTGGTCTG GAGTTTCAGG AGAGCCAGGG CTAGATAGTG
  ACACCCTGCC TGGTGGGTAA GAAGCAACAA CAAAGGGATG GATGGATGGA TGGATGGATG
  S
  ATGGATGGAT GGATGCATGG ATGGAGGGAT GGATGGAAAT TTAAAGATTA CTTTGGCCGG
  GCACTTGGGA AGCAGAGGCA GGCGAATTTC TGAGTTTGAG G                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147670428	ENSMUSSNP2807034	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52721490					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:139898754 () rs orientation: forward

Symbol	Name	Function Class
Tasp1	taspase, threonine aspartase 1	within coordinates
Tssr20476	transcription start site region 20476	814 bp downstream
Tssr20477	transcription start site region 20477	787 bp downstream
Tssr20478	transcription start site region 20478	771 bp downstream