rs52727004 SNP Detail

Summary

• ID
  rs52727004
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:79406805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACTGCTCAG CACTGGAGAT GTTTCTGGAT AAGACACACA
  CTTGGTGCAA GGAATGGTAT TGGCCCAGGA CCCCCAAGAC TAGGTTCTCC ACTCAAAGGA
  G
  ATTTATTTTT TTCCCAGAGG GACAGAGTGC CAGGAATAAG AGATAAAGGC AGGAGTCAGA
  GGAAGAGGGA GAGGGGAAGG AAACAAGGGA GAGGGGCAG                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss146049544	ENSMUSSNP4134951	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52727004					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:79406805 () rs orientation: forward

Symbol	Name	Function Class
Gm65520	predicted gene, 65520	within coordinates
Rr392979	regulatory region 392979	51 bp upstream
Rr531251	regulatory region 531251	633 bp proximal