rs52727008 SNP Detail

Summary

• ID
  rs52727008
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:79406945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGTGCAA GGAATGGTAT
  TGGCCCAGGA CCCCCAAGAC TAGGTTCTCC ACTCAAAGGA AATTTATTTT TTTCCCAGAG
  GGACAGAGTG CCAGGAATAA GAGATAAAGG CAGGAGTCAG AGGAAGAGGG AGAGGGGAAG
  GAAACAAGGG AGAGGGGCAG GATTTTTTCC AGAGTGGGAC AAAGGACTAC CTTTAGATGG
  C
  CGCTGCCCTT AGATGTGGCC CATAGAAAAA TGGAGGTTTT ATAAAGGTAA AATGGGAAAC
  CCCATGTTAG GATGAAGTTT TTAATTTTAA TTACGTGAGC CAAAGGGGGC TTTTGATTGC
  TGGACTTCAA TAGTTTAATG GCTGGACCTT GGCAATCAGC CTCTGGAGGA GGAAGTGGCC
  AAATAAAGGA ATAGACCTTG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146049553	ENSMUSSNP3119842	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss325475936	CHEV_17_79498856	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52727008					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:79406945 () rs orientation: forward

Symbol	Name	Function Class
Gm65520	predicted gene, 65520	within coordinates
Rr392979	regulatory region 392979	within coordinates
Rr531251	regulatory region 531251	493 bp proximal