rs52744911 SNP Detail

Summary

• ID
  rs52744911
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127030126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGACAGCCAG GGCTACACAG AGAAACCCTG TCTCAAAAAA
  AAAAAAAAAA AAGAAAAGAA AAGAAAAGAA AAAAAACAGG AGGAGGAGGA GGAGGAGGAG
  K
  AGGAGGAGGA AGGAAAACTA TTCCCCAACC CCAAAGCCCC AACTCAGGAG CCCTTGAAAT
  GGCCAGGAAC CTGGGGTAGG GGTACTGGAA ATGGGGATT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323529111	CHEV_10_126631313	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52744911					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127030126 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2345	CpG island 2345	874 bp proximal
Dtx3	deltex 3, E3 ubiquitin ligase	within coordinates
F420014N23Rik	RIKEN cDNA F420014N23 gene	992 bp upstream
Gm57007	predicted gene, 57007	within coordinates
Rr224404	regulatory region 224404	74 bp proximal
Tssr96170	transcription start site region 96170	983 bp upstream
Tssr99735	transcription start site region 99735	1097 bp upstream
Tssr99736	transcription start site region 99736	941 bp downstream
Tssr99737	transcription start site region 99737	1456 bp downstream