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rs578301963 SNP Detail
Summary
  • ID
    rs578301963
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr14:103287629 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          GTTTG TGTGTGTGTG TGTGCATGTG
Y
GTGTGTGTGT GTGTGCGGTG TGTGA                                      

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss922494518 MGP_WTSI_14_103050193 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs578301963 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss922494518 MGP_WTSI_14_103050193 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr14:103287629 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Acod1 aconitate decarboxylase 1 within coordinates
Gm41235 predicted gene, 41235 1453 bp upstream
Rr404266 regulatory region 404266 1268 bp upstream
Rr496962 regulatory region 496962 1046 bp distal
Rr496963 regulatory region 496963 1313 bp proximal
Rr496964 regulatory region 496964 1365 bp proximal
Rr496965 regulatory region 496965 1412 bp proximal
Tssr4512 transcription start site region 4512 1098 bp downstream
Tssr126972 transcription start site region 126972 1288 bp downstream
Tssr126973 transcription start site region 126973 1161 bp downstream
Tssr126974 transcription start site region 126974 931 bp downstream
Tssr126975 transcription start site region 126975 917 bp downstream
Tssr126976 transcription start site region 126976 894 bp downstream
Tssr126977 transcription start site region 126977 869 bp downstream
Tssr126978 transcription start site region 126978 827 bp downstream
Tssr126979 transcription start site region 126979 808 bp downstream
Tssr126980 transcription start site region 126980 796 bp downstream
Tssr126981 transcription start site region 126981 585 bp downstream
Tssr126982 transcription start site region 126982 527 bp downstream
Tssr126983 transcription start site region 126983 490 bp downstream
Tssr126984 transcription start site region 126984 317 bp downstream
Tssr126985 transcription start site region 126985 108 bp upstream
Tssr126986 transcription start site region 126986 841 bp upstream
Tssr126987 transcription start site region 126987 880 bp upstream
Tssr126988 transcription start site region 126988 1097 bp upstream
Tssr126989 transcription start site region 126989 1120 bp upstream
Tssr126990 transcription start site region 126990 1327 bp upstream
Tssr126991 transcription start site region 126991 1399 bp upstream
Tssr126992 transcription start site region 126992 1624 bp upstream
Tssr126993 transcription start site region 126993 1643 bp upstream
Tssr126994 transcription start site region 126994 1665 bp upstream
Tssr126995 transcription start site region 126995 1706 bp upstream
Tssr130074 transcription start site region 130074 1811 bp upstream
Tssr130075 transcription start site region 130075 1772 bp upstream
Tssr130076 transcription start site region 130076 1757 bp upstream
Tssr130077 transcription start site region 130077 1486 bp upstream
Tssr130078 transcription start site region 130078 1459 bp upstream
Tssr130079 transcription start site region 130079 1438 bp upstream
Tssr130080 transcription start site region 130080 1230 bp downstream
Tssr130081 transcription start site region 130081 1285 bp downstream
Tssr130082 transcription start site region 130082 1312 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory