rs578315017 SNP Detail

Summary

• ID
  rs578315017
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:139735934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAC ATACACTCAT ACACACACAC
  W
  CACACACACA CACACACTCA CACAT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ZALENDE/EiJ
ss919083680	MGP_WTSI_7_140156021	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ZALENDE/EiJ
rs578315017					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss919083680	MGP_WTSI_7_140156021	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:139735934 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19900	CpG island 19900	1190 bp distal
Rr657729	regulatory region 657729	654 bp distal
Rr657730	regulatory region 657730	807 bp proximal
Rr657731	regulatory region 657731	1027 bp proximal
Sprn	shadow of prion protein	1362 bp upstream
Tssr75508	transcription start site region 75508	1323 bp upstream
Tssr75509	transcription start site region 75509	1276 bp upstream