rs578320335 SNP Detail

Summary

• ID
  rs578320335
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:33421240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCT TTGTATATAT AATACAAATA
  W
  ATATAAATAC AAATACTAAT ATATT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	NOD/ShiLtJ	PWK/PhJ	SPRET/EiJ
ss924455272	MGP_WTSI_X_33983777	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	NOD/ShiLtJ	PWK/PhJ	SPRET/EiJ
rs578320335					SNP	A	A	A	A	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924455272	MGP_WTSI_X_33983777	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:33421240 () rs orientation: forward

Symbol	Name	Function Class
Gm21870	predicted gene, 21870	1873 bp downstream
Gm61620	predicted gene, 61620	1771 bp downstream
Gm61788	predicted gene, 61788	within coordinates