rs578339498 SNP Detail

Summary

• ID
  rs578339498
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3071723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAT AAAAATAATT TTTCTTTCTT
  C
  CTTTCTTTCT TTCTTTCTTT CTTTC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57L/J	CAST/EiJ	CE/J	I/LnJ	LEWES/EiJ	LG/J	LP/J	RF/J	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss920693798	MGP_WTSI_11_3121723	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57L/J	CAST/EiJ	CE/J	I/LnJ	LEWES/EiJ	LG/J	LP/J	RF/J	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs578339498					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss920693798	MGP_WTSI_11_3121723	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3071723 () rs orientation: forward

Symbol	Name	Function Class
Gm74511	predicted gene, 74511	within coordinates
Rr402381	regulatory region 402381	498 bp downstream
Rr441449	regulatory region 441449	426 bp proximal
Rr441450	regulatory region 441450	1196 bp proximal
Rr441451	regulatory region 441451	1603 bp proximal
Rr441452	regulatory region 441452	1762 bp proximal