rs578341639 SNP Detail

Summary

• ID
  rs578341639
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:21425102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTT GGGTTTTTTT TGGGGGGGGG
  R
  GGGGTGTCTG TTTTTGTTGG GTTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SPRET/EiJ
ss921202579	MGP_WTSI_12_21375101	EVA_MGPV3	EVA_MGPV3	f	SNP	A	G	G	A	A	A	A	A	A	A	A	G	A	A	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SPRET/EiJ
rs578341639					SNP	A	G	G	A	A	A	A	A	A	A	A	G	A	A	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss921202579	MGP_WTSI_12_21375101	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:21425102 () rs orientation: forward

Symbol	Name	Function Class
Adam17	a disintegrin and metallopeptidase domain 17	1469 bp upstream
Cpgi4477	CpG island 4477	894 bp distal
Gm49586	predicted gene, 49586	755 bp downstream
Rr463712	regulatory region 463712	1662 bp distal
Rr463713	regulatory region 463713	1418 bp distal
Rr463714	regulatory region 463714	1537 bp distal
Rr463715	regulatory region 463715	377 bp distal
Rr463716	regulatory region 463716	1357 bp distal
Rr463717	regulatory region 463717	869 bp distal
Tssr112932	transcription start site region 112932	1322 bp downstream
Tssr112933	transcription start site region 112933	844 bp downstream
Tssr115856	transcription start site region 115856	1609 bp upstream
Tssr115857	transcription start site region 115857	1583 bp upstream
Tssr115858	transcription start site region 115858	1555 bp upstream
Tssr115859	transcription start site region 115859	1509 bp upstream
Tssr115860	transcription start site region 115860	1484 bp upstream