rs578377355 SNP Detail

Summary

• ID
  rs578377355
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:93351452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCGC GAGCAGGAGC TGAGGCAGGA
  R
  CTGAGGCGCG AGCAGGAGCT AAGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss916289609	MGP_WTSI_3_93444145	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs578377355					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916289609	MGP_WTSI_3_93444145	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:93351452 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13475	CpG island 13475	within coordinates
Gm37245	predicted gene, 37245	within coordinates
Gm56800	predicted gene, 56800	within coordinates
Gm66249	predicted gene, 66249	within coordinates
Tchh	trichohyalin	within coordinates
Tssr960	transcription start site region 960	715 bp downstream
Tssr961	transcription start site region 961	139 bp downstream
Tssr962	transcription start site region 962	978 bp upstream
Tssr963	transcription start site region 963	1015 bp upstream
Tssr964	transcription start site region 964	1111 bp upstream
Tssr30345	transcription start site region 30345	1756 bp downstream
Tssr30346	transcription start site region 30346	1731 bp downstream
Tssr30347	transcription start site region 30347	672 bp downstream
Tssr30348	transcription start site region 30348	652 bp downstream
Tssr30349	transcription start site region 30349	640 bp downstream
Tssr30350	transcription start site region 30350	596 bp downstream
Tssr30351	transcription start site region 30351	572 bp downstream
Tssr30352	transcription start site region 30352	522 bp downstream
Tssr30353	transcription start site region 30353	503 bp downstream
Tssr30354	transcription start site region 30354	488 bp downstream
Tssr30355	transcription start site region 30355	469 bp downstream
Tssr30356	transcription start site region 30356	415 bp downstream
Tssr30357	transcription start site region 30357	360 bp downstream
Tssr30358	transcription start site region 30358	242 bp downstream
Tssr30359	transcription start site region 30359	216 bp downstream
Tssr30360	transcription start site region 30360	186 bp downstream
Tssr30361	transcription start site region 30361	132 bp upstream
Tssr30362	transcription start site region 30362	146 bp upstream
Tssr30363	transcription start site region 30363	289 bp upstream
Tssr30364	transcription start site region 30364	360 bp upstream
Tssr30365	transcription start site region 30365	395 bp upstream
Tssr30366	transcription start site region 30366	447 bp upstream
Tssr30367	transcription start site region 30367	491 bp upstream
Tssr30368	transcription start site region 30368	508 bp upstream
Tssr30369	transcription start site region 30369	521 bp upstream
Tssr30370	transcription start site region 30370	528 bp upstream
Tssr30371	transcription start site region 30371	548 bp upstream
Tssr30372	transcription start site region 30372	561 bp upstream
Tssr30373	transcription start site region 30373	612 bp upstream
Tssr30374	transcription start site region 30374	630 bp upstream
Tssr30375	transcription start site region 30375	643 bp upstream
Tssr30376	transcription start site region 30376	669 bp upstream
Tssr30377	transcription start site region 30377	691 bp upstream
Tssr30378	transcription start site region 30378	724 bp upstream
Tssr30379	transcription start site region 30379	742 bp upstream
Tssr30380	transcription start site region 30380	822 bp upstream
Tssr30381	transcription start site region 30381	840 bp upstream
Tssr30382	transcription start site region 30382	899 bp upstream
Tssr30383	transcription start site region 30383	910 bp upstream
Tssr30384	transcription start site region 30384	919 bp upstream
Tssr30385	transcription start site region 30385	935 bp upstream
Tssr30386	transcription start site region 30386	956 bp upstream
Tssr30387	transcription start site region 30387	1047 bp upstream
Tssr30388	transcription start site region 30388	1073 bp upstream
Tssr30389	transcription start site region 30389	1087 bp upstream
Tssr30390	transcription start site region 30390	1159 bp upstream
Tssr30391	transcription start site region 30391	1178 bp upstream
Tssr30392	transcription start site region 30392	1196 bp upstream
Tssr30393	transcription start site region 30393	1213 bp upstream
Tssr30394	transcription start site region 30394	1233 bp upstream
Tssr30395	transcription start site region 30395	1258 bp upstream
Tssr30396	transcription start site region 30396	1307 bp upstream
Tssr30397	transcription start site region 30397	1324 bp upstream
Tssr30398	transcription start site region 30398	1399 bp upstream
Tssr30399	transcription start site region 30399	1446 bp upstream
Tssr30400	transcription start site region 30400	1931 bp upstream
Tssr30401	transcription start site region 30401	1951 bp upstream
Tssr34352	transcription start site region 34352	261 bp upstream
Tssr34353	transcription start site region 34353	255 bp upstream
Tssr34354	transcription start site region 34354	204 bp upstream
Tssr34355	transcription start site region 34355	107 bp upstream
Tssr34356	transcription start site region 34356	560 bp downstream
Tssr34357	transcription start site region 34357	605 bp downstream
Tssr34358	transcription start site region 34358	657 bp downstream
Tssr34359	transcription start site region 34359	726 bp downstream
Tssr34360	transcription start site region 34360	807 bp downstream
Tssr34361	transcription start site region 34361	828 bp downstream
Tssr34362	transcription start site region 34362	877 bp downstream
Tssr34363	transcription start site region 34363	904 bp downstream
Tssr34364	transcription start site region 34364	921 bp downstream
Tssr34365	transcription start site region 34365	935 bp downstream
Tssr34366	transcription start site region 34366	995 bp downstream
Tssr34367	transcription start site region 34367	1128 bp downstream
Tssr34368	transcription start site region 34368	1207 bp downstream
Tssr34369	transcription start site region 34369	1232 bp downstream
Tssr34370	transcription start site region 34370	1246 bp downstream
Tssr34371	transcription start site region 34371	1300 bp downstream