rs578377989 SNP Detail

Summary

• ID
  rs578377989
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149977608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTC TTTAAAGTTC AGCCATTGTA
  M
  AGCAGGGTAT CTTTGTCTGA AGGAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss915059779	MGP_WTSI_1_150101857	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs578377989					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915059779	MGP_WTSI_1_150101857	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149977608 () rs orientation: forward

Symbol	Name	Function Class
Cpgi844	CpG island 844	1536 bp distal
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Ptgs2os	prostaglandin-endoperoxide synthase 2, opposite strand	1983 bp upstream
Tssr242	transcription start site region 242	943 bp upstream
Tssr9222	transcription start site region 9222	1751 bp downstream
Tssr9223	transcription start site region 9223	908 bp downstream
Tssr9224	transcription start site region 9224	800 bp downstream
Tssr9225	transcription start site region 9225	675 bp downstream
Tssr9226	transcription start site region 9226	662 bp downstream
Tssr9227	transcription start site region 9227	584 bp downstream
Tssr9228	transcription start site region 9228	544 bp downstream
Tssr9229	transcription start site region 9229	531 bp downstream
Tssr9230	transcription start site region 9230	120 bp upstream
Tssr9231	transcription start site region 9231	272 bp upstream
Tssr9232	transcription start site region 9232	312 bp upstream
Tssr9233	transcription start site region 9233	785 bp upstream
Tssr9234	transcription start site region 9234	789 bp upstream
Tssr9235	transcription start site region 9235	829 bp upstream
Tssr9236	transcription start site region 9236	866 bp upstream
Tssr9237	transcription start site region 9237	885 bp upstream
Tssr9238	transcription start site region 9238	914 bp upstream
Tssr9239	transcription start site region 9239	955 bp upstream
Tssr9240	transcription start site region 9240	977 bp upstream
Tssr9241	transcription start site region 9241	1003 bp upstream
Tssr9242	transcription start site region 9242	1023 bp upstream
Tssr9243	transcription start site region 9243	1147 bp upstream
Tssr9244	transcription start site region 9244	1192 bp upstream
Tssr9245	transcription start site region 9245	1212 bp upstream
Tssr9246	transcription start site region 9246	1249 bp upstream
Tssr9247	transcription start site region 9247	1388 bp upstream
Tssr9248	transcription start site region 9248	1808 bp upstream
Tssr9249	transcription start site region 9249	1835 bp upstream
Tssr14130	transcription start site region 14130	595 bp upstream
Tssr14131	transcription start site region 14131	539 bp upstream