rs578381850 SNP Detail

Summary

• ID
  rs578381850
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58660540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGA TAGAATAGTT TTATATATAT
  R
  TATATATATA TATATATATA TATAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BR/cdJ	C58/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SPRET/EiJ
ss924349410	MGP_WTSI_19_58672108	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BR/cdJ	C58/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SPRET/EiJ
rs578381850					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924349410	MGP_WTSI_19_58672108	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58660540 () rs orientation: forward

Symbol	Name	Function Class
Pnlip	pancreatic lipase	within coordinates
Tssr5571	transcription start site region 5571	1013 bp upstream
Tssr157258	transcription start site region 157258	1901 bp downstream
Tssr157259	transcription start site region 157259	1753 bp downstream
Tssr157260	transcription start site region 157260	1740 bp downstream
Tssr157261	transcription start site region 157261	1678 bp downstream
Tssr157262	transcription start site region 157262	1647 bp downstream
Tssr157263	transcription start site region 157263	387 bp downstream
Tssr157264	transcription start site region 157264	329 bp downstream
Tssr157265	transcription start site region 157265	277 bp downstream
Tssr157266	transcription start site region 157266	964 bp upstream
Tssr157267	transcription start site region 157267	978 bp upstream
Tssr157268	transcription start site region 157268	1036 bp upstream
Tssr157269	transcription start site region 157269	1633 bp upstream
Tssr157270	transcription start site region 157270	1696 bp upstream
Tssr159956	transcription start site region 159956	1510 bp upstream
Tssr159957	transcription start site region 159957	369 bp upstream
Tssr159958	transcription start site region 159958	242 bp upstream
Tssr159959	transcription start site region 159959	1007 bp downstream
Tssr159960	transcription start site region 159960	1061 bp downstream