rs578431800 SNP Detail

Summary

• ID
  rs578431800
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180888428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTC CCCTCCCCTC CCCTCCCCTC
  Y
  CCTCCCCTCC CCTCTCCTCT CCTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	FVB/NJ	LG/J	NOD/ShiLtJ	PWK/PhJ	RF/J	SM/J	ST/bJ	WSB/EiJ
ss915162089	MGP_WTSI_1_181060863	EVA_MGPV3	EVA_MGPV3	f	SNP	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	FVB/NJ	LG/J	NOD/ShiLtJ	PWK/PhJ	RF/J	SM/J	ST/bJ	WSB/EiJ
rs578431800					SNP	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915162089	MGP_WTSI_1_181060863	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180888428 () rs orientation: forward

Symbol	Name	Function Class
Degs1l	delta 4-desaturase, sphingolipid 1 like	196 bp downstream
Gm37406	predicted gene, 37406	1212 bp upstream
Tssr10513	transcription start site region 10513	1195 bp upstream