About   Help   FAQ
rs578480014 SNP Detail
Summary
  • ID
    rs578480014
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:93354087 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          GCAAG AGCTCCGCCG GGAGCAAGAG
Y
TCCGCCGGGA GCAAGAGCTC CGCCA                                      

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss916289626 MGP_WTSI_3_93446780 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs578480014 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss916289626 MGP_WTSI_3_93446780 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:93354087 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi13475 CpG island 13475 within coordinates
Gm37245 predicted gene, 37245 within coordinates
Gm56800 predicted gene, 56800 1986 bp upstream
Gm66249 predicted gene, 66249 within coordinates
Rr580538 regulatory region 580538 1496 bp distal
Rr580539 regulatory region 580539 1073 bp proximal
Tchh trichohyalin within coordinates
Tssr962 transcription start site region 962 1654 bp downstream
Tssr963 transcription start site region 963 1618 bp downstream
Tssr964 transcription start site region 964 1519 bp downstream
Tssr30374 transcription start site region 30374 1998 bp downstream
Tssr30375 transcription start site region 30375 1985 bp downstream
Tssr30376 transcription start site region 30376 1949 bp downstream
Tssr30377 transcription start site region 30377 1923 bp downstream
Tssr30378 transcription start site region 30378 1901 bp downstream
Tssr30379 transcription start site region 30379 1884 bp downstream
Tssr30380 transcription start site region 30380 1805 bp downstream
Tssr30381 transcription start site region 30381 1788 bp downstream
Tssr30382 transcription start site region 30382 1733 bp downstream
Tssr30383 transcription start site region 30383 1722 bp downstream
Tssr30384 transcription start site region 30384 1713 bp downstream
Tssr30385 transcription start site region 30385 1688 bp downstream
Tssr30386 transcription start site region 30386 1666 bp downstream
Tssr30387 transcription start site region 30387 1572 bp downstream
Tssr30388 transcription start site region 30388 1553 bp downstream
Tssr30389 transcription start site region 30389 1531 bp downstream
Tssr30390 transcription start site region 30390 1460 bp downstream
Tssr30391 transcription start site region 30391 1450 bp downstream
Tssr30392 transcription start site region 30392 1432 bp downstream
Tssr30393 transcription start site region 30393 1421 bp downstream
Tssr30394 transcription start site region 30394 1395 bp downstream
Tssr30395 transcription start site region 30395 1368 bp downstream
Tssr30396 transcription start site region 30396 1318 bp downstream
Tssr30397 transcription start site region 30397 1302 bp downstream
Tssr30398 transcription start site region 30398 1224 bp downstream
Tssr30399 transcription start site region 30399 1145 bp downstream
Tssr30400 transcription start site region 30400 696 bp downstream
Tssr30401 transcription start site region 30401 675 bp downstream
Tssr30402 transcription start site region 30402 575 bp downstream
Tssr30403 transcription start site region 30403 538 bp downstream
Tssr30404 transcription start site region 30404 593 bp upstream
Tssr30405 transcription start site region 30405 704 bp upstream
Tssr30406 transcription start site region 30406 852 bp upstream
Tssr30407 transcription start site region 30407 1047 bp upstream
Tssr34357 transcription start site region 34357 1996 bp upstream
Tssr34358 transcription start site region 34358 1937 bp upstream
Tssr34359 transcription start site region 34359 1862 bp upstream
Tssr34360 transcription start site region 34360 1817 bp upstream
Tssr34361 transcription start site region 34361 1760 bp upstream
Tssr34362 transcription start site region 34362 1747 bp upstream
Tssr34363 transcription start site region 34363 1722 bp upstream
Tssr34364 transcription start site region 34364 1707 bp upstream
Tssr34365 transcription start site region 34365 1681 bp upstream
Tssr34366 transcription start site region 34366 1613 bp upstream
Tssr34367 transcription start site region 34367 1448 bp upstream
Tssr34368 transcription start site region 34368 1418 bp upstream
Tssr34369 transcription start site region 34369 1392 bp upstream
Tssr34370 transcription start site region 34370 1366 bp upstream
Tssr34371 transcription start site region 34371 1223 bp upstream
Tssr34372 transcription start site region 34372 562 bp upstream
Tssr34373 transcription start site region 34373 596 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory