rs578491418 SNP Detail

Summary

• ID
  rs578491418
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:52247755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACA CCTAGTCCAG AACCGCCGCC
  R
  CCACCACACA CACACACACA CACAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	MA/MyJ	MOLF/EiJ	SJL/J
ss922308745	MGP_WTSI_14_52010298	EVA_MGPV3	EVA_MGPV3	f	SNP	G	A	G	G	G	G	G	G	G	G	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	MA/MyJ	MOLF/EiJ	SJL/J
rs578491418					SNP	G	A	G	G	G	G	G	G	G	G	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss922308745	MGP_WTSI_14_52010298	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:52247755 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6435	CpG island 6435	636 bp distal
D14Mit183	DNA segment, Chr 14, Massachusetts Institute of Technology 183	within coordinates
Rr369820	regulatory region 369820	1451 bp downstream
Rr369821	regulatory region 369821	1167 bp downstream
Tssr128467	transcription start site region 128467	1586 bp upstream
Tssr128468	transcription start site region 128468	1405 bp upstream
Tssr128469	transcription start site region 128469	1312 bp upstream
Tssr128470	transcription start site region 128470	1094 bp upstream
Tssr128471	transcription start site region 128471	663 bp upstream
Tssr128472	transcription start site region 128472	635 bp upstream
Tssr128473	transcription start site region 128473	550 bp downstream
Tssr128474	transcription start site region 128474	570 bp downstream
Zfp219	zinc finger protein 219	within coordinates