rs578492846 SNP Detail

Summary

• ID
  rs578492846
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126815505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCAA AAAAAAAAAA AAACAAAAAA
  M
  AAAAAAAACA AAAAACAAAA AAAAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	QSi3/Ianm	RF/J	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ
ss919040978	MGP_WTSI_7_127216333	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	QSi3/Ianm	RF/J	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ
rs578492846					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss919040978	MGP_WTSI_7_127216333	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126815505 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19731	CpG island 19731	1426 bp distal
Cpgi19732	CpG island 19732	849 bp distal
Rr368445	regulatory region 368445	1684 bp upstream
Rr655747	regulatory region 655747	872 bp distal
Rr655748	regulatory region 655748	1960 bp proximal
Septin1	septin 1	within coordinates
Tssr69180	transcription start site region 69180	1766 bp downstream
Tssr74961	transcription start site region 74961	1570 bp upstream
Tssr74962	transcription start site region 74962	1300 bp upstream
Tssr74963	transcription start site region 74963	1263 bp upstream
Tssr74964	transcription start site region 74964	1230 bp upstream
Tssr74965	transcription start site region 74965	984 bp upstream
Tssr74966	transcription start site region 74966	890 bp upstream
Tssr74967	transcription start site region 74967	638 bp upstream
Tssr74968	transcription start site region 74968	1676 bp downstream