rs578544328 SNP Detail

Summary

• ID
  rs578544328
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:111829647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAATG CTATCCCAAA AGCCTCCCAC
  M
  CCCTCCCCCC CACCCCCCTA CCCAC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	LP/J	NON/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J
ss916990300	MGP_WTSI_4_111972450	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	C	A	C	C	A	A	A	A	A	A	A	A	C	C	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	LP/J	NON/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J
rs578544328					SNP	A	A	C	A	C	C	A	A	A	A	A	A	A	A	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916990300	MGP_WTSI_4_111972450	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111829647 () rs orientation: forward

Symbol	Name	Function Class
Skint7	selection and upkeep of intraepithelial T cells 7	473 bp upstream
Tssr38394	transcription start site region 38394	383 bp upstream
Tssr38395	transcription start site region 38395	472 bp upstream
Tssr38396	transcription start site region 38396	582 bp upstream