rs578545534 SNP Detail

Summary

• ID
  rs578545534
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:29778862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGA AGGAGAAGGA GAAGGAGAAG
  G
  AGAAGGAGAA GGAGAAGAAG AAGAA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SM/J	ST/bJ
ss915332800	MGP_WTSI_2_29888850	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SM/J	ST/bJ
rs578545534					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915332800	MGP_WTSI_2_29888850	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29778862 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11418	CpG island 11418	138 bp proximal
Gm75149	predicted gene, 75149	within coordinates
Odf2	outer dense fiber of sperm tails 2	371 bp upstream
Rr396853	regulatory region 396853	725 bp upstream
Rr554171	regulatory region 554171	1914 bp distal
Rr554172	regulatory region 554172	1709 bp distal
Rr554173	regulatory region 554173	380 bp proximal
Rr554174	regulatory region 554174	1753 bp proximal
Rr554175	regulatory region 554175	1826 bp proximal
Tssr452	transcription start site region 452	859 bp upstream
Tssr453	transcription start site region 453	1138 bp upstream
Tssr454	transcription start site region 454	1155 bp upstream
Tssr455	transcription start site region 455	1188 bp upstream
Tssr456	transcription start site region 456	1260 bp upstream
Tssr17034	transcription start site region 17034	349 bp upstream
Tssr17035	transcription start site region 17035	367 bp upstream
Tssr17036	transcription start site region 17036	892 bp upstream
Tssr17037	transcription start site region 17037	952 bp upstream
Tssr17038	transcription start site region 17038	1216 bp upstream
Tssr17039	transcription start site region 17039	1246 bp upstream
Tssr17040	transcription start site region 17040	1596 bp upstream
Tssr17041	transcription start site region 17041	1670 bp upstream
Tssr17042	transcription start site region 17042	1684 bp upstream
Tssr17043	transcription start site region 17043	1705 bp upstream
Tssr17044	transcription start site region 17044	1848 bp upstream
Tssr23341	transcription start site region 23341	1484 bp downstream