rs578553307 SNP Detail

Summary

• ID
  rs578553307
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:22714894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTT CCTGTTTCCT CTCTGAAAAC
  W
  TAACCTCTGC CCCATGCGAT GGACA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss923082500	MGP_WTSI_16_22896144	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs578553307					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923082500	MGP_WTSI_16_22896144	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:22714894 () rs orientation: forward

Symbol	Name	Function Class
Ahsg	alpha-2-HS-glycoprotein	within coordinates
Gm30505	predicted gene, 30505	1758 bp upstream
Rr513336	regulatory region 513336	1814 bp distal
Rr513337	regulatory region 513337	1348 bp distal
Tssr4819	transcription start site region 4819	803 bp downstream
Tssr4820	transcription start site region 4820	187 bp downstream
Tssr137563	transcription start site region 137563	1903 bp downstream
Tssr137564	transcription start site region 137564	1873 bp downstream
Tssr137565	transcription start site region 137565	1736 bp downstream
Tssr137566	transcription start site region 137566	1727 bp downstream
Tssr137567	transcription start site region 137567	1359 bp downstream
Tssr137568	transcription start site region 137568	1328 bp downstream
Tssr137569	transcription start site region 137569	1307 bp downstream
Tssr137570	transcription start site region 137570	1290 bp downstream
Tssr137571	transcription start site region 137571	952 bp downstream
Tssr137572	transcription start site region 137572	853 bp downstream
Tssr137573	transcription start site region 137573	843 bp downstream
Tssr137574	transcription start site region 137574	824 bp downstream
Tssr137575	transcription start site region 137575	814 bp downstream
Tssr137576	transcription start site region 137576	129 bp downstream
Tssr137577	transcription start site region 137577	278 bp upstream
Tssr137578	transcription start site region 137578	349 bp upstream
Tssr137579	transcription start site region 137579	1971 bp upstream
Tssr140504	transcription start site region 140504	1752 bp upstream
Tssr140505	transcription start site region 140505	1703 bp upstream
Tssr140506	transcription start site region 140506	1283 bp upstream
Tssr140507	transcription start site region 140507	920 bp upstream
Tssr140508	transcription start site region 140508	878 bp upstream
Tssr140509	transcription start site region 140509	860 bp upstream
Tssr140510	transcription start site region 140510	812 bp upstream
Tssr140511	transcription start site region 140511	798 bp upstream
Tssr140512	transcription start site region 140512	413 bp downstream
Tssr140513	transcription start site region 140513	424 bp downstream
Tssr140514	transcription start site region 140514	457 bp downstream