rs578564337 SNP Detail

Summary

• ID
  rs578564337
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149979120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAA AAGTCACTTA TTGAGCTAGA
  T
  TGGTGATTAA GAACAGTTGT TGCTT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss915059785	MGP_WTSI_1_150103369	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs578564337					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915059785	MGP_WTSI_1_150103369	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149979120 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	881 bp proximal
Rr24983	regulatory region 24983	913 bp proximal
Rr31002	regulatory region 31002	1720 bp distal
Tssr242	transcription start site region 242	564 bp downstream
Tssr9230	transcription start site region 9230	1256 bp downstream
Tssr9231	transcription start site region 9231	1223 bp downstream
Tssr9232	transcription start site region 9232	1180 bp downstream
Tssr9233	transcription start site region 9233	724 bp downstream
Tssr9234	transcription start site region 9234	695 bp downstream
Tssr9235	transcription start site region 9235	664 bp downstream
Tssr9236	transcription start site region 9236	639 bp downstream
Tssr9237	transcription start site region 9237	607 bp downstream
Tssr9238	transcription start site region 9238	576 bp downstream
Tssr9239	transcription start site region 9239	542 bp downstream
Tssr9240	transcription start site region 9240	528 bp downstream
Tssr9241	transcription start site region 9241	498 bp downstream
Tssr9242	transcription start site region 9242	482 bp downstream
Tssr9243	transcription start site region 9243	355 bp downstream
Tssr9244	transcription start site region 9244	304 bp downstream
Tssr9245	transcription start site region 9245	268 bp downstream
Tssr9246	transcription start site region 9246	249 bp downstream
Tssr9247	transcription start site region 9247	114 bp downstream
Tssr9248	transcription start site region 9248	296 bp upstream
Tssr9249	transcription start site region 9249	323 bp upstream
Tssr9250	transcription start site region 9250	491 bp upstream
Tssr9251	transcription start site region 9251	537 bp upstream
Tssr9252	transcription start site region 9252	592 bp upstream
Tssr9253	transcription start site region 9253	622 bp upstream
Tssr9254	transcription start site region 9254	649 bp upstream
Tssr9255	transcription start site region 9255	668 bp upstream
Tssr9256	transcription start site region 9256	908 bp upstream
Tssr9257	transcription start site region 9257	932 bp upstream
Tssr9258	transcription start site region 9258	955 bp upstream
Tssr9259	transcription start site region 9259	980 bp upstream
Tssr9260	transcription start site region 9260	1035 bp upstream
Tssr9261	transcription start site region 9261	1090 bp upstream
Tssr9262	transcription start site region 9262	1098 bp upstream
Tssr9263	transcription start site region 9263	1120 bp upstream
Tssr9264	transcription start site region 9264	1165 bp upstream
Tssr9265	transcription start site region 9265	1196 bp upstream
Tssr9266	transcription start site region 9266	1285 bp upstream
Tssr9267	transcription start site region 9267	1576 bp upstream
Tssr9268	transcription start site region 9268	1632 bp upstream