AGGAG GCCAGACCGC CTCCGCCTGC R GGGCCACAGC TGCTGCCGCC GCCGT R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss923740117 | MGP_WTSI_17_84186935 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs578581681 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss923740117 | MGP_WTSI_17_84186935 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | A/G |
Location: Chr17:84494363 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi9565 | CpG island 9565 | within coordinates | ||||||
Cpgi9566 | CpG island 9566 | 676 bp proximal | ||||||
Gm56881 | predicted gene, 56881 | 1212 bp upstream | ||||||
Rr340271 | regulatory region 340271 | within coordinates | ||||||
Rr405496 | regulatory region 405496 | 938 bp upstream | ||||||
Tssr146044 | transcription start site region 146044 | 1174 bp downstream | ||||||
Tssr146045 | transcription start site region 146045 | 155 bp upstream | ||||||
Tssr146046 | transcription start site region 146046 | 1669 bp upstream | ||||||
Tssr149650 | transcription start site region 149650 | 1348 bp upstream | ||||||
Tssr149651 | transcription start site region 149651 | 1294 bp upstream | ||||||
Tssr149652 | transcription start site region 149652 | 914 bp upstream | ||||||
Tssr149653 | transcription start site region 149653 | 862 bp upstream | ||||||
Tssr149654 | transcription start site region 149654 | 738 bp upstream | ||||||
Tssr149655 | transcription start site region 149655 | 594 bp upstream | ||||||
Tssr149656 | transcription start site region 149656 | 553 bp upstream | ||||||
Tssr149657 | transcription start site region 149657 | 323 bp upstream | ||||||
Tssr149658 | transcription start site region 149658 | 280 bp upstream | ||||||
Tssr149659 | transcription start site region 149659 | 244 bp upstream | ||||||
Tssr149660 | transcription start site region 149660 | 218 bp upstream | ||||||
Tssr149661 | transcription start site region 149661 | 155 bp upstream | ||||||
Tssr149662 | transcription start site region 149662 | 115 bp upstream | ||||||
Tssr149663 | transcription start site region 149663 | 46 bp upstream | ||||||
Tssr149664 | transcription start site region 149664 | 3 bp upstream | ||||||
Tssr149665 | transcription start site region 149665 | 23 bp downstream | ||||||
Tssr149666 | transcription start site region 149666 | 92 bp downstream | ||||||
Tssr149667 | transcription start site region 149667 | 181 bp downstream | ||||||
Tssr149668 | transcription start site region 149668 | 236 bp downstream | ||||||
Tssr149669 | transcription start site region 149669 | 269 bp downstream | ||||||
Tssr149670 | transcription start site region 149670 | 802 bp downstream | ||||||
Tssr149671 | transcription start site region 149671 | 892 bp downstream | ||||||
Tssr149672 | transcription start site region 149672 | 1004 bp downstream | ||||||
Zfp36l2 | zinc finger protein 36, C3H type-like 2 | within coordinates |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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