rs578586450 SNP Detail

Summary

• ID
  rs578586450
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:21669949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAG GAAGGAAGGA AGGAAGGAAG
  G
  AAGGAAGAAA GAAAGAAAGA AAGAA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	SJL/J	ST/bJ	SWR/J	WSB/EiJ
ss923468765	MGP_WTSI_17_21449687	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	SJL/J	ST/bJ	SWR/J	WSB/EiJ
rs578586450					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923468765	MGP_WTSI_17_21449687	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:21669949 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8654	CpG island 8654	569 bp proximal
Gm49691	predicted gene, 49691	within coordinates
Rr329631	regulatory region 329631	within coordinates
Rr339243	regulatory region 339243	51 bp proximal
Rr405059	regulatory region 405059	45 bp upstream
Rr405060	regulatory region 405060	447 bp upstream
Tssr142875	transcription start site region 142875	674 bp upstream
Tssr142876	transcription start site region 142876	749 bp upstream
Tssr146589	transcription start site region 146589	569 bp downstream
Zfp51	zinc finger protein 51	687 bp upstream