rs578586894 SNP Detail

Summary

• ID
  rs578586894
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140429587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAG CGCGAGCGGC CCGAGCGCTG
  C
  AGCAGCAGCA GCGGCGGCGG CAGCA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J	WSB/EiJ
ss917113016	MGP_WTSI_4_140702276	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J	WSB/EiJ
rs578586894					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917113016	MGP_WTSI_4_140702276	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140429587 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15195	CpG island 15195	within coordinates
Gm69527	predicted gene, 69527	1006 bp upstream
Gm69529	predicted gene, 69529	1806 bp downstream
Rcc2	regulator of chromosome condensation 2	within coordinates
Rr377298	regulatory region 377298	552 bp downstream
Rr603518	regulatory region 603518	1725 bp distal
Rr603519	regulatory region 603519	1017 bp distal
Rr603520	regulatory region 603520	793 bp distal
Rr603521	regulatory region 603521	845 bp distal
Tssr39974	transcription start site region 39974	1930 bp downstream
Tssr39975	transcription start site region 39975	1791 bp downstream
Tssr39976	transcription start site region 39976	1747 bp downstream
Tssr39977	transcription start site region 39977	1663 bp downstream
Tssr39978	transcription start site region 39978	839 bp downstream
Tssr39979	transcription start site region 39979	813 bp downstream
Tssr39980	transcription start site region 39980	767 bp downstream
Tssr39981	transcription start site region 39981	755 bp downstream
Tssr39982	transcription start site region 39982	728 bp downstream
Tssr39983	transcription start site region 39983	657 bp downstream
Tssr39984	transcription start site region 39984	437 bp downstream
Tssr39985	transcription start site region 39985	354 bp downstream
Tssr39986	transcription start site region 39986	314 bp downstream
Tssr39987	transcription start site region 39987	126 bp downstream
Tssr39988	transcription start site region 39988	78 bp downstream
Tssr39989	transcription start site region 39989	38 bp downstream
Tssr44273	transcription start site region 44273	1187 bp upstream
Tssr44274	transcription start site region 44274	122 bp downstream
Tssr44275	transcription start site region 44275	1390 bp downstream