rs578587979 SNP Detail

Summary

• ID
  rs578587979
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:56264550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCT CCCTTCCTCC CTCCCTCCCT
  Y
  CCTCCCTCCC TCCCTCCCTC CCTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/10SnJ	CZECHII/EiJ	NOD/ShiLtJ	QSi3/Ianm
ss924341355	MGP_WTSI_19_56276118	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/10SnJ	CZECHII/EiJ	NOD/ShiLtJ	QSi3/Ianm
rs578587979					SNP	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924341355	MGP_WTSI_19_56276118	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:56264550 () rs orientation: forward

Symbol	Name	Function Class
Gm22271	predicted gene, 22271	1400 bp downstream
Gm32257	predicted gene, 32257	within coordinates
Rr549993	regulatory region 549993	1234 bp proximal
Rr549994	regulatory region 549994	1464 bp proximal
Rr549995	regulatory region 549995	1884 bp proximal
Rr549996	regulatory region 549996	1910 bp proximal
Rr549997	regulatory region 549997	1974 bp proximal