rs578602649 SNP Detail

Summary

• ID
  rs578602649
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:189074374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATTT TCTCTCTCTC TCTCTCTCTC
  Y
  CTCCCTCCCT CCCTCCCTCC CTCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/10SnJ	CE/J
ss915196089	MGP_WTSI_1_189342177	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/10SnJ	CE/J
rs578602649					SNP	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915196089	MGP_WTSI_1_189342177	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189074374 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A430027H14Rik	RIKEN cDNA A430027H14 gene			874 bp upstream
Cpgi1195	CpG island 1195			557 bp proximal
Kcnk2	potassium channel, subfamily K, member 2			Intron
				Noncoding-Transcript-Variant
Rr425779	regulatory region 425779			336 bp distal
Rr425780	regulatory region 425780			274 bp proximal
Rr425781	regulatory region 425781			1015 bp proximal
Rr425782	regulatory region 425782			1168 bp proximal
Rr425783	regulatory region 425783			1265 bp proximal
Rr425784	regulatory region 425784			1520 bp proximal
Rr425785	regulatory region 425785			1778 bp proximal
Rr425786	regulatory region 425786			1818 bp proximal
Tssr15712	transcription start site region 15712			1165 bp downstream
Tssr15713	transcription start site region 15713			1530 bp downstream