rs578619998 SNP Detail

Summary

• ID
  rs578619998
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:56982056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAC TAGGTCTTTA TTATTATTAT
  Y
  ATTATTAATT AATTAATGTA TTATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss919839940	MGP_WTSI_9_57074772	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs578619998					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss919839940	MGP_WTSI_9_57074772	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56982056 () rs orientation: forward

Symbol	Name	Function Class
2700012I20Rik	RIKEN cDNA 2700012I20 gene	431 bp downstream
Cpgi21807	CpG island 21807	570 bp distal
Cpgi21808	CpG island 21808	165 bp distal
Cpgi21809	CpG island 21809	903 bp proximal
Gm57026	predicted gene, 57026	7 bp downstream
Rr368762	regulatory region 368762	385 bp downstream
Rr401392	regulatory region 401392	402 bp upstream
Rr401393	regulatory region 401393	1164 bp upstream
Rr679582	regulatory region 679582	1697 bp distal
Rr679583	regulatory region 679583	1020 bp distal
Rr679584	regulatory region 679584	1276 bp distal
Rr679585	regulatory region 679585	1196 bp distal
Rr679586	regulatory region 679586	76 bp proximal
Rr679587	regulatory region 679587	577 bp proximal
Rr679588	regulatory region 679588	1062 bp proximal
Rr679589	regulatory region 679589	1254 bp proximal
Rr679590	regulatory region 679590	1638 bp proximal
Sin3a	transcriptional regulator, SIN3A (yeast)	Intron
Tssr2884	transcription start site region 2884	663 bp upstream
Tssr85284	transcription start site region 85284	1018 bp downstream
Tssr85285	transcription start site region 85285	900 bp downstream
Tssr85286	transcription start site region 85286	1571 bp upstream
Tssr85287	transcription start site region 85287	1623 bp upstream