rs578660425 SNP Detail

Summary

• ID
  rs578660425
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:9618078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAG GGAGGGAGGG AGGGAGGGAG
  R
  GAGAGAGAGA GAGAGAGAGA GAGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	C57BL/6NJ	CZECHII/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZO/HlLtJ	RIIIS/J	SEA/GnJ	SJL/J	SWR/J
ss923813287	MGP_WTSI_18_9618078	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	C57BL/6NJ	CZECHII/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZO/HlLtJ	RIIIS/J	SEA/GnJ	SJL/J	SWR/J
rs578660425					SNP	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923813287	MGP_WTSI_18_9618078	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:9618078 () rs orientation: forward

Symbol	Name	Function Class
Cetn1	centrin 1	341 bp downstream
Cpgi9693	CpG island 9693	1263 bp proximal
Gm58470	predicted gene, 58470	336 bp upstream
Tssr152399	transcription start site region 152399	1345 bp downstream
Tssr152400	transcription start site region 152400	1358 bp downstream
Tssr152401	transcription start site region 152401	1382 bp downstream