rs578663192 SNP Detail

Summary

• ID
  rs578663192
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:7869664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGGG CCGCGGCGGA GGGCGGGCGG
  W
  CGGGCGGGCG GGCGGGCGTC CTTAT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss923804044	MGP_WTSI_18_7869664	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs578663192					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923804044	MGP_WTSI_18_7869664	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:7869664 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9688	CpG island 9688	within coordinates
Gm9993	predicted gene 9993	551 bp upstream
Rr405554	regulatory region 405554	396 bp downstream
Rr533616	regulatory region 533616	588 bp distal
Rr533617	regulatory region 533617	153 bp distal
Rr533618	regulatory region 533618	within coordinates
Tssr149978	transcription start site region 149978	1170 bp downstream
Tssr149979	transcription start site region 149979	802 bp downstream
Tssr149980	transcription start site region 149980	776 bp downstream
Tssr149981	transcription start site region 149981	512 bp downstream
Tssr149982	transcription start site region 149982	455 bp downstream
Tssr149983	transcription start site region 149983	438 bp downstream
Tssr149984	transcription start site region 149984	335 bp downstream
Tssr149985	transcription start site region 149985	283 bp downstream
Tssr149986	transcription start site region 149986	43 bp upstream
Tssr149987	transcription start site region 149987	211 bp upstream
Tssr152379	transcription start site region 152379	540 bp upstream
Wac	WW domain containing adaptor with coiled-coil	within coordinates