rs578693811 SNP Detail

Summary

• ID
  rs578693811
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:107905257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGCG TGTGTGTGTG TGTGTGCGTG
  Y
  GTGTGTGTGC GTGCGTGCGT GTGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	LP/J	MA/MyJ	NON/ShiLtJ	RIIIS/J	SWR/J	WSB/EiJ
ss921555313	MGP_WTSI_12_107938998	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	LP/J	MA/MyJ	NON/ShiLtJ	RIIIS/J	SWR/J	WSB/EiJ
rs578693811					SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss921555313	MGP_WTSI_12_107938998	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:107905257 () rs orientation: forward

Symbol	Name	Function Class
Bcl11b	B cell leukemia/lymphoma 11B	within coordinates
Rr387761	regulatory region 387761	668 bp downstream
Tssr117636	transcription start site region 117636	336 bp upstream
Tssr117637	transcription start site region 117637	307 bp upstream
Tssr117638	transcription start site region 117638	249 bp upstream
Tssr117639	transcription start site region 117639	230 bp upstream
Tssr117640	transcription start site region 117640	214 bp upstream
Tssr117641	transcription start site region 117641	197 bp upstream
Tssr117642	transcription start site region 117642	159 bp upstream
Tssr117643	transcription start site region 117643	40 bp upstream
Tssr117644	transcription start site region 117644	61 bp downstream
Tssr117645	transcription start site region 117645	92 bp downstream
Tssr117646	transcription start site region 117646	132 bp downstream
Tssr117647	transcription start site region 117647	148 bp downstream
Tssr117648	transcription start site region 117648	208 bp downstream
Tssr117649	transcription start site region 117649	234 bp downstream
Tssr117650	transcription start site region 117650	272 bp downstream