rs578695658 SNP Detail

Summary

• ID
  rs578695658
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147441843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCATA TATATATATA TATATACATA
  Y
  ATATATATAT ACATATATAT GCACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BR/cdJ	C57L/J	C58/J	LP/J	NZO/HlLtJ	RIIIS/J	SEA/GnJ	ZALENDE/EiJ
ss917137845	MGP_WTSI_4_147357386	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BR/cdJ	C57L/J	C58/J	LP/J	NZO/HlLtJ	RIIIS/J	SEA/GnJ	ZALENDE/EiJ
rs578695658					SNP	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917137845	MGP_WTSI_4_147357386	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147441843 () rs orientation: forward

Symbol	Name	Function Class
Rr398794	regulatory region 398794	661 bp upstream