rs578716368 SNP Detail

Summary

• ID
  rs578716368
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:105279498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAG GAATAAGGGG GAAGGGAAGA
  W
  AGGGAAGGGG AGGGAAGGGA AGAAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss917606480	MGP_WTSI_5_105131632	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs578716368					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917606480	MGP_WTSI_5_105131632	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:105279498 () rs orientation: forward

Symbol	Name	Function Class
Gbp4	guanylate binding protein 4	within coordinates
Tssr1571	transcription start site region 1571	140 bp downstream
Tssr52267	transcription start site region 52267	300 bp upstream
Tssr52268	transcription start site region 52268	246 bp upstream
Tssr52269	transcription start site region 52269	171 bp upstream
Tssr52270	transcription start site region 52270	9 bp upstream
Tssr52271	transcription start site region 52271	106 bp downstream
Tssr52272	transcription start site region 52272	165 bp downstream
Tssr52273	transcription start site region 52273	235 bp downstream
Tssr52274	transcription start site region 52274	263 bp downstream
Tssr52275	transcription start site region 52275	283 bp downstream
Tssr52276	transcription start site region 52276	312 bp downstream
Tssr52277	transcription start site region 52277	342 bp downstream
Tssr52278	transcription start site region 52278	364 bp downstream
Tssr52279	transcription start site region 52279	430 bp downstream
Tssr52280	transcription start site region 52280	479 bp downstream
Tssr52281	transcription start site region 52281	509 bp downstream
Tssr52282	transcription start site region 52282	539 bp downstream
Tssr52283	transcription start site region 52283	617 bp downstream
Tssr52284	transcription start site region 52284	676 bp downstream
Tssr52285	transcription start site region 52285	710 bp downstream
Tssr52286	transcription start site region 52286	723 bp downstream
Tssr52287	transcription start site region 52287	752 bp downstream
Tssr52288	transcription start site region 52288	769 bp downstream
Tssr52289	transcription start site region 52289	849 bp downstream
Tssr52290	transcription start site region 52290	956 bp downstream
Tssr52291	transcription start site region 52291	1296 bp downstream
Tssr52292	transcription start site region 52292	1775 bp downstream
Tssr52293	transcription start site region 52293	1945 bp downstream