rs578734676 SNP Detail

Summary

• ID
  rs578734676
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:85310878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCGAC AGTTGCCTTG TCTCAAAGAA
  K
  CTGAGATGGA AAAAAACACA CATGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CBA/J	CZECHII/EiJ	LG/J	MOLF/EiJ	PWK/PhJ	RF/J	SPRET/EiJ	ST/bJ
ss914774095	MGP_WTSI_1_85333157	EVA_MGPV3	EVA_MGPV3	f	SNP	G	T	G	T	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CBA/J	CZECHII/EiJ	LG/J	MOLF/EiJ	PWK/PhJ	RF/J	SPRET/EiJ	ST/bJ
rs578734676					SNP	G	T	G	T	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss914774095	MGP_WTSI_1_85333157	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:85310878 () rs orientation: forward

Symbol	Name	Function Class
Gm7281	predicted gene 7281	within coordinates
Gm16025	predicted gene 16025	within coordinates