rs578764045 SNP Detail

Summary

• ID
  rs578764045
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48044011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAT GTTTTGTTTT GTTTTGTTTT
  R
  TTTTTGTTAT TTGTTTTGTT TTGTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss916754892	MGP_WTSI_4_48044011	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs578764045					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916754892	MGP_WTSI_4_48044011	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48044011 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14277	CpG island 14277	202 bp distal
Cpgi14278	CpG island 14278	534 bp proximal
Gm57084	predicted gene, 57084	798 bp upstream
Gm69235	predicted gene, 69235	within coordinates
Nr4a3	nuclear receptor subfamily 4, group A, member 3	1142 bp upstream
Rr376438	regulatory region 376438	within coordinates
Rr591923	regulatory region 591923	1111 bp distal
Rr591924	regulatory region 591924	583 bp distal
Rr591925	regulatory region 591925	1036 bp distal
Rr591926	regulatory region 591926	349 bp distal
Rr591927	regulatory region 591927	652 bp proximal
Rr591928	regulatory region 591928	1153 bp proximal
Rr591929	regulatory region 591929	1514 bp proximal
Tssr37180	transcription start site region 37180	988 bp downstream
Tssr37181	transcription start site region 37181	470 bp downstream
Tssr37182	transcription start site region 37182	439 bp downstream
Tssr37183	transcription start site region 37183	359 bp downstream
Tssr37184	transcription start site region 37184	334 bp downstream
Tssr37185	transcription start site region 37185	162 bp downstream
Tssr37186	transcription start site region 37186	147 bp downstream
Tssr37187	transcription start site region 37187	1104 bp upstream
Tssr37188	transcription start site region 37188	1133 bp upstream
Tssr37189	transcription start site region 37189	1164 bp upstream
Tssr37190	transcription start site region 37190	1219 bp upstream
Tssr37191	transcription start site region 37191	1246 bp upstream
Tssr37192	transcription start site region 37192	1313 bp upstream
Tssr37193	transcription start site region 37193	1369 bp upstream
Tssr37194	transcription start site region 37194	1959 bp upstream
Tssr41627	transcription start site region 41627	1512 bp upstream
Tssr41628	transcription start site region 41628	1479 bp upstream
Tssr41629	transcription start site region 41629	1140 bp upstream
Tssr41630	transcription start site region 41630	771 bp upstream
Tssr41631	transcription start site region 41631	882 bp downstream
Tssr41632	transcription start site region 41632	940 bp downstream