rs578769309 SNP Detail

Summary

• ID
  rs578769309
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:61214683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTT CGTAGCCACC ACGTCGTCCA
  G
  GAACCGCACT GGCCCCGCAC CGCTC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss924355656	MGP_WTSI_19_61226245	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs578769309					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924355656	MGP_WTSI_19_61226245	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:61214683 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11146	CpG island 11146			within coordinates
Csf2ra	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)			Coding-Synonymous
				Noncoding-Transcript-Variant
Gm56644	predicted gene, 56644			within coordinates
Rr406075	regulatory region 406075			1664 bp downstream
Rr406076	regulatory region 406076			within coordinates
Rr406077	regulatory region 406077			981 bp upstream
Rr550840	regulatory region 550840			593 bp proximal
Rr550841	regulatory region 550841			1121 bp proximal
Tssr157374	transcription start site region 157374			1805 bp downstream
Tssr157375	transcription start site region 157375			1762 bp downstream
Tssr157376	transcription start site region 157376			1700 bp downstream
Tssr157377	transcription start site region 157377			1635 bp downstream
Tssr157378	transcription start site region 157378			1561 bp downstream
Tssr157379	transcription start site region 157379			1483 bp downstream
Tssr157380	transcription start site region 157380			1247 bp upstream
Tssr157381	transcription start site region 157381			1512 bp upstream
Tssr160090	transcription start site region 160090			1639 bp upstream
Tssr160091	transcription start site region 160091			1615 bp upstream
Tssr160092	transcription start site region 160092			1491 bp upstream
Tssr160093	transcription start site region 160093			1396 bp upstream
Tssr160094	transcription start site region 160094			1334 bp upstream
Tssr160095	transcription start site region 160095			1247 bp upstream
Tssr160096	transcription start site region 160096			799 bp upstream
Tssr160097	transcription start site region 160097			603 bp upstream
Tssr160098	transcription start site region 160098			143 bp upstream
Tssr160099	transcription start site region 160099			39 bp downstream
Tssr160100	transcription start site region 160100			92 bp downstream
Tssr160101	transcription start site region 160101			405 bp downstream
Tssr160102	transcription start site region 160102			948 bp downstream
Tssr160103	transcription start site region 160103			1060 bp downstream