rs578774616 SNP Detail

Summary

• ID
  rs578774616
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149981018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTTT ACTGAGAAAG AGGAGTGGGA
  A
  TGGGGTCAGC TAGTGAGCGG GGGAA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss915059805	MGP_WTSI_1_150105267	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs578774616					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915059805	MGP_WTSI_1_150105267	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149981018 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	618 bp distal
Rr24983	regulatory region 24983	722 bp distal
Tssr9248	transcription start site region 9248	1579 bp downstream
Tssr9249	transcription start site region 9249	1565 bp downstream
Tssr9250	transcription start site region 9250	1364 bp downstream
Tssr9251	transcription start site region 9251	1312 bp downstream
Tssr9252	transcription start site region 9252	1277 bp downstream
Tssr9253	transcription start site region 9253	1252 bp downstream
Tssr9254	transcription start site region 9254	1236 bp downstream
Tssr9255	transcription start site region 9255	1185 bp downstream
Tssr9256	transcription start site region 9256	980 bp downstream
Tssr9257	transcription start site region 9257	946 bp downstream
Tssr9258	transcription start site region 9258	930 bp downstream
Tssr9259	transcription start site region 9259	873 bp downstream
Tssr9260	transcription start site region 9260	821 bp downstream
Tssr9261	transcription start site region 9261	802 bp downstream
Tssr9262	transcription start site region 9262	781 bp downstream
Tssr9263	transcription start site region 9263	769 bp downstream
Tssr9264	transcription start site region 9264	720 bp downstream
Tssr9265	transcription start site region 9265	693 bp downstream
Tssr9266	transcription start site region 9266	604 bp downstream
Tssr9267	transcription start site region 9267	269 bp downstream
Tssr9268	transcription start site region 9268	199 bp downstream
Tssr9269	transcription start site region 9269	117 bp upstream
Tssr9270	transcription start site region 9270	157 bp upstream
Tssr9271	transcription start site region 9271	181 bp upstream
Tssr9272	transcription start site region 9272	211 bp upstream
Tssr9273	transcription start site region 9273	263 bp upstream
Tssr9274	transcription start site region 9274	281 bp upstream
Tssr9275	transcription start site region 9275	308 bp upstream
Tssr9276	transcription start site region 9276	323 bp upstream
Tssr9277	transcription start site region 9277	373 bp upstream
Tssr9278	transcription start site region 9278	394 bp upstream
Tssr9279	transcription start site region 9279	415 bp upstream
Tssr9280	transcription start site region 9280	432 bp upstream
Tssr9281	transcription start site region 9281	538 bp upstream
Tssr9282	transcription start site region 9282	573 bp upstream
Tssr9283	transcription start site region 9283	587 bp upstream
Tssr9284	transcription start site region 9284	602 bp upstream
Tssr9285	transcription start site region 9285	612 bp upstream
Tssr9286	transcription start site region 9286	696 bp upstream
Tssr9287	transcription start site region 9287	1209 bp upstream
Tssr9288	transcription start site region 9288	1325 bp upstream
Tssr9289	transcription start site region 9289	1342 bp upstream
Tssr9290	transcription start site region 9290	1498 bp upstream
Tssr9291	transcription start site region 9291	1544 bp upstream
Tssr9292	transcription start site region 9292	1663 bp upstream
Tssr9293	transcription start site region 9293	1692 bp upstream
Tssr9294	transcription start site region 9294	1712 bp upstream
Tssr9295	transcription start site region 9295	1728 bp upstream
Tssr9296	transcription start site region 9296	1750 bp upstream
Tssr9297	transcription start site region 9297	1759 bp upstream
Tssr9298	transcription start site region 9298	1785 bp upstream
Tssr9299	transcription start site region 9299	1807 bp upstream
Tssr9300	transcription start site region 9300	1824 bp upstream
Tssr9301	transcription start site region 9301	1958 bp upstream
Tssr9302	transcription start site region 9302	1988 bp upstream