rs578781064 SNP Detail

Summary

• ID
  rs578781064
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57529704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGT CTTTAAAAAA GGAAAGGGGG
  K
  AGGGAGAGAA AGAGAGAGAG AGAAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss923635042	MGP_WTSI_17_57222704	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs578781064					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923635042	MGP_WTSI_17_57222704	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57529704 () rs orientation: forward

Symbol	Name	Function Class
C3	complement component 3	within coordinates
Cpgi9399	CpG island 9399	1618 bp proximal
Gm65552	predicted gene, 65552	1194 bp downstream
Tssr145377	transcription start site region 145377	473 bp downstream
Tssr145378	transcription start site region 145378	408 bp upstream
Tssr145379	transcription start site region 145379	489 bp upstream
Tssr145380	transcription start site region 145380	518 bp upstream
Tssr145381	transcription start site region 145381	584 bp upstream
Tssr145382	transcription start site region 145382	1114 bp upstream
Tssr145383	transcription start site region 145383	1230 bp upstream
Tssr145384	transcription start site region 145384	1363 bp upstream
Tssr148935	transcription start site region 148935	1652 bp upstream
Tssr148936	transcription start site region 148936	1631 bp upstream
Tssr148937	transcription start site region 148937	1610 bp upstream
Tssr148938	transcription start site region 148938	1304 bp upstream
Tssr148939	transcription start site region 148939	775 bp upstream
Tssr148940	transcription start site region 148940	431 bp upstream
Tssr148941	transcription start site region 148941	358 bp upstream
Tssr148942	transcription start site region 148942	127 bp downstream
Tssr148943	transcription start site region 148943	167 bp downstream
Tssr148944	transcription start site region 148944	187 bp downstream
Tssr148945	transcription start site region 148945	215 bp downstream
Tssr148946	transcription start site region 148946	240 bp downstream
Tssr148947	transcription start site region 148947	479 bp downstream
Tssr148948	transcription start site region 148948	531 bp downstream
Tssr148949	transcription start site region 148949	586 bp downstream
Tssr148950	transcription start site region 148950	1151 bp downstream
Tssr148951	transcription start site region 148951	1192 bp downstream
Tssr148952	transcription start site region 148952	1233 bp downstream
Tssr148953	transcription start site region 148953	1417 bp downstream
Tssr148954	transcription start site region 148954	1468 bp downstream
Tssr148955	transcription start site region 148955	1615 bp downstream
Tssr148956	transcription start site region 148956	1648 bp downstream