rs578803862 SNP Detail

Summary

• ID
  rs578803862
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137178394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGTG GTGACATCAG CAGTGGTGGT
  R
  ACATCAGCAG TGGTGGTGAC ATCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10J	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	ST/bJ
ss917727685	MGP_WTSI_5_137149546	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	A	A	A	A	A	A	G	G	A	A	A	A	A	A	G	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10J	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	ST/bJ
rs578803862					SNP	G	G	A	A	A	A	A	A	G	G	A	A	A	A	A	A	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917727685	MGP_WTSI_5_137149546	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137178394 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1677	transcription start site region 1677	278 bp upstream
Tssr1678	transcription start site region 1678	938 bp downstream
Tssr1679	transcription start site region 1679	1881 bp downstream
Tssr1680	transcription start site region 1680	1901 bp upstream
Tssr1681	transcription start site region 1681	1924 bp downstream
Tssr1682	transcription start site region 1682	1941 bp downstream
Tssr49309	transcription start site region 49309	232 bp upstream
Tssr49310	transcription start site region 49310	592 bp upstream
Tssr49311	transcription start site region 49311	606 bp upstream
Tssr49312	transcription start site region 49312	986 bp upstream
Tssr49313	transcription start site region 49313	1234 bp upstream
Tssr49314	transcription start site region 49314	1505 bp upstream
Tssr49315	transcription start site region 49315	1521 bp upstream
Tssr53919	transcription start site region 53919	92 bp downstream
Tssr53920	transcription start site region 53920	108 bp downstream
Tssr53921	transcription start site region 53921	263 bp downstream
Tssr53922	transcription start site region 53922	304 bp downstream
Tssr53923	transcription start site region 53923	345 bp downstream
Tssr53924	transcription start site region 53924	359 bp downstream
Tssr53925	transcription start site region 53925	397 bp downstream
Tssr53926	transcription start site region 53926	428 bp downstream
Tssr53927	transcription start site region 53927	577 bp downstream
Tssr53928	transcription start site region 53928	595 bp downstream
Tssr53929	transcription start site region 53929	632 bp downstream
Tssr53930	transcription start site region 53930	697 bp downstream
Tssr53931	transcription start site region 53931	722 bp downstream
Tssr53932	transcription start site region 53932	738 bp downstream
Tssr53933	transcription start site region 53933	776 bp downstream
Tssr53934	transcription start site region 53934	808 bp downstream
Tssr53935	transcription start site region 53935	859 bp downstream
Tssr53936	transcription start site region 53936	880 bp downstream
Tssr53937	transcription start site region 53937	970 bp downstream
Tssr53938	transcription start site region 53938	1006 bp downstream
Tssr53939	transcription start site region 53939	1060 bp downstream
Tssr53940	transcription start site region 53940	1236 bp downstream
Tssr53941	transcription start site region 53941	1276 bp downstream
Tssr53942	transcription start site region 53942	1335 bp downstream
Tssr53943	transcription start site region 53943	1500 bp downstream
Tssr53944	transcription start site region 53944	1549 bp downstream
Tssr53945	transcription start site region 53945	1559 bp downstream
Tssr53946	transcription start site region 53946	1580 bp downstream
Tssr53947	transcription start site region 53947	1688 bp downstream