rs578805972 SNP Detail

Summary

• ID
  rs578805972
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:39305731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTT AGGAAATCCC CCCCCCCACA
  M
  ACACACACCT GTGTCAATGA GTTCA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	PWK/PhJ	RIIIS/J	ZALENDE/EiJ
ss924274016	MGP_WTSI_19_39317287	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	C	A	A	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	PWK/PhJ	RIIIS/J	ZALENDE/EiJ
rs578805972					SNP	A	A	C	A	A	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924274016	MGP_WTSI_19_39317287	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:39305731 () rs orientation: forward

Symbol	Name	Function Class
Cyp2c29	cytochrome P450, family 2, subfamily c, polypeptide 29	Intron
Tssr156337	transcription start site region 156337	1799 bp downstream
Tssr156338	transcription start site region 156338	1766 bp downstream
Tssr156339	transcription start site region 156339	1740 bp downstream
Tssr156340	transcription start site region 156340	1616 bp downstream
Tssr156341	transcription start site region 156341	1590 bp downstream