rs578844132 SNP Detail

Summary

• ID
  rs578844132
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:9066917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCT CCCTCCCTCT CTCTCTCTCT
  C
  TCTCTCTTTC TTTCTTTCTT TCTTT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	FVB/NJ	I/LnJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PL/J	RIIIS/J	SJL/J	ST/bJ
ss920716921	MGP_WTSI_11_9116917	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	FVB/NJ	I/LnJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PL/J	RIIIS/J	SJL/J	ST/bJ
rs578844132					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss920716921	MGP_WTSI_11_9116917	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:9066917 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2578	CpG island 2578	1435 bp proximal
Rr385585	regulatory region 385585	within coordinates
Rr442635	regulatory region 442635	420 bp distal
Rr442636	regulatory region 442636	696 bp proximal
Rr442637	regulatory region 442637	1601 bp proximal
Tssr3423	transcription start site region 3423	1181 bp upstream
Tssr3424	transcription start site region 3424	1217 bp upstream
Tssr100322	transcription start site region 100322	1035 bp upstream
Tssr100323	transcription start site region 100323	1081 bp upstream
Tssr100324	transcription start site region 100324	1153 bp upstream
Tssr100325	transcription start site region 100325	1619 bp upstream
Tssr100326	transcription start site region 100326	1654 bp upstream
Tssr100327	transcription start site region 100327	1702 bp upstream
Upp1	uridine phosphorylase 1	1186 bp upstream