rs578845220 SNP Detail

Summary

• ID
  rs578845220
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:121216125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGACC TGGGGGCCCC GGCCCCGCCG
  Y
  CCCCTCCCGA TTCCCTGGAA GGTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss919572856	MGP_WTSI_8_120489386	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs578845220					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss919572856	MGP_WTSI_8_120489386	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:121216125 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21144	CpG island 21144	985 bp distal
Cpgi21145	CpG island 21145	within coordinates
Gm51556	predicted gene, 51556	within coordinates
Gm63872	predicted gene, 63872	1451 bp downstream
Gse1	genetic suppressor element 1, coiled-coil protein	Intron
Rr671534	regulatory region 671534	1696 bp distal
Rr671535	regulatory region 671535	929 bp distal
Rr671536	regulatory region 671536	1316 bp distal
Rr671537	regulatory region 671537	959 bp distal
Rr671538	regulatory region 671538	within coordinates
Tssr79754	transcription start site region 79754	1737 bp downstream
Tssr79755	transcription start site region 79755	1720 bp downstream
Tssr79756	transcription start site region 79756	1186 bp downstream
Tssr79757	transcription start site region 79757	1161 bp downstream
Tssr79758	transcription start site region 79758	1145 bp downstream
Tssr79759	transcription start site region 79759	896 bp downstream
Tssr79760	transcription start site region 79760	876 bp downstream
Tssr79761	transcription start site region 79761	817 bp downstream
Tssr79762	transcription start site region 79762	638 bp downstream
Tssr79763	transcription start site region 79763	583 bp downstream
Tssr79764	transcription start site region 79764	546 bp downstream
Tssr79765	transcription start site region 79765	319 bp downstream
Tssr83193	transcription start site region 83193	42 bp upstream
Tssr83194	transcription start site region 83194	42 bp downstream