rs578879577 SNP Detail

Summary

• ID
  rs578879577
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:75989809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGATT TCAGCCTTTC CCAGCTCTGG
  Y
  TTGGGGTGAA GGTGGGGGTG GGGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	PWK/PhJ	SPRET/EiJ
ss921945265	MGP_WTSI_13_75841690	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	PWK/PhJ	SPRET/EiJ
rs578879577					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss921945265	MGP_WTSI_13_75841690	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:75989809 () rs orientation: forward

Symbol	Name	Function Class
Glrx	glutaredoxin	within coordinates
Rr482793	regulatory region 482793	1770 bp distal
Rr482794	regulatory region 482794	279 bp proximal
Tssr120401	transcription start site region 120401	1809 bp downstream
Tssr120402	transcription start site region 120402	1762 bp downstream
Tssr120403	transcription start site region 120403	1646 bp downstream
Tssr120404	transcription start site region 120404	1605 bp downstream