rs578923497 SNP Detail

Summary

• ID
  rs578923497
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137178164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGA CATCAGCTGT TGTGGTGACA
  Y
  CTGCAGTGGT GGTGACATCA GCAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss917727679	MGP_WTSI_5_137149316	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs578923497					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917727679	MGP_WTSI_5_137149316	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137178164 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1677	transcription start site region 1677	48 bp upstream
Tssr1678	transcription start site region 1678	1168 bp downstream
Tssr49309	transcription start site region 49309	462 bp upstream
Tssr49310	transcription start site region 49310	822 bp upstream
Tssr49311	transcription start site region 49311	836 bp upstream
Tssr49312	transcription start site region 49312	1216 bp upstream
Tssr49313	transcription start site region 49313	1464 bp upstream
Tssr49314	transcription start site region 49314	1735 bp upstream
Tssr49315	transcription start site region 49315	1751 bp upstream
Tssr53919	transcription start site region 53919	322 bp downstream
Tssr53920	transcription start site region 53920	338 bp downstream
Tssr53921	transcription start site region 53921	493 bp downstream
Tssr53922	transcription start site region 53922	534 bp downstream
Tssr53923	transcription start site region 53923	575 bp downstream
Tssr53924	transcription start site region 53924	589 bp downstream
Tssr53925	transcription start site region 53925	627 bp downstream
Tssr53926	transcription start site region 53926	658 bp downstream
Tssr53927	transcription start site region 53927	807 bp downstream
Tssr53928	transcription start site region 53928	825 bp downstream
Tssr53929	transcription start site region 53929	862 bp downstream
Tssr53930	transcription start site region 53930	927 bp downstream
Tssr53931	transcription start site region 53931	952 bp downstream
Tssr53932	transcription start site region 53932	968 bp downstream
Tssr53933	transcription start site region 53933	1006 bp downstream
Tssr53934	transcription start site region 53934	1038 bp downstream
Tssr53935	transcription start site region 53935	1089 bp downstream
Tssr53936	transcription start site region 53936	1110 bp downstream
Tssr53937	transcription start site region 53937	1200 bp downstream
Tssr53938	transcription start site region 53938	1236 bp downstream
Tssr53939	transcription start site region 53939	1290 bp downstream
Tssr53940	transcription start site region 53940	1466 bp downstream
Tssr53941	transcription start site region 53941	1506 bp downstream
Tssr53942	transcription start site region 53942	1565 bp downstream
Tssr53943	transcription start site region 53943	1730 bp downstream
Tssr53944	transcription start site region 53944	1779 bp downstream
Tssr53945	transcription start site region 53945	1789 bp downstream
Tssr53946	transcription start site region 53946	1810 bp downstream
Tssr53947	transcription start site region 53947	1918 bp downstream